The Estonian Journal of Ecology is an international scientific journal published by the Estonian Academy of Sciences in collaboration with the University of Tartu, Tallinn University of Technology, Tallinn University, and the Estonian University of Life Sciences.

The journal publishes primary research and review papers in the English language. All articles are provided with short Estonian summaries. All papers to be published in the journal are peer reviewed internationally. The journal is open for publications in all fields of fundamental and applied ecology either observational, experimental or modelling. All levels of biological organization will be considered across a whole range of temporal and spatial scales in both terrestrial and aquatic ecosystems. A unifying theme is the region of Northern Eurasia.

The journal is published quarterly.